PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_22887A
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family MYB_related
Protein Properties Length: 188aa    MW: 20091.4 Da    PI: 9.7923
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_22887AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.12.1e-181472148
                               TSSS-HHHHHHHHHHHHHTTTT............-HHHHHHHHTTTS-HHHHHHHHHHHT CS
            Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg............tWktIartmgkgRtlkqcksrwqkyl 48
                               +grWT+eEde l ++++++G g            +W++Ia +++ gRt++++k++w+++l
  Oropetium_20150105_22887A 14 KGRWTKEEDETLTRYIQEHGEGlwrtlpknagllRWSLIAGHLP-GRTDNEIKNYWNSHL 72
                               79******************************************.************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466899.33E-15377IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-21575IPR009057Homeodomain-like
PROSITE profilePS5129420.197976IPR017930Myb domain
SMARTSM007174.4E-161374IPR001005SANT/Myb domain
PfamPF002495.3E-161472IPR001005SANT/Myb domain
CDDcd001674.34E-141672No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MGRAPCCEKV GLKKGRWTKE EDETLTRYIQ EHGEGLWRTL PKNAGLLRWS LIAGHLPGRT  60
DNEIKNYWNS HLSRRASDFR GGSDGVVVNV DLSKLPGGGK RRGGRTSRGG AAAAGKGGNV  120
KKGNGKGKAK EKVMDVAPPR KAKGEQEQMD TNGPTPSSQQ CGEEEHASAS GVTSDGLEDG  180
PLGLNEEM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF5218801e-41AF521880.1 Zea mays R2R3 Myb transcription factor MYB-IF35 mRNA, complete cds.
GenBankBT0399011e-41BT039901.1 Zea mays full-length cDNA clone ZM_BFc0050D21 mRNA, complete cds.
GenBankBT0633081e-41BT063308.1 Zea mays full-length cDNA clone ZM_BFc0051B20 mRNA, complete cds.
GenBankBT0882001e-41BT088200.1 Zea mays full-length cDNA clone ZM_BFc0061H17 mRNA, complete cds.
GenBankHQ8587211e-41HQ858721.1 Zea mays clone UT1188 MYB-IF35 transcription factor mRNA, partial cds.
GenBankHQ8587681e-41HQ858768.1 Zea mays clone UT1749 MYB transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004967542.18e-56PREDICTED: myb-related protein P-like
SwissprotP278983e-38MYBP_MAIZE; Myb-related protein P
TrEMBLA0A0A9JQV12e-61A0A0A9JQV1_ARUDO; Uncharacterized protein
STRINGSi002107m2e-55(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP11637448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49330.14e-36myb domain protein 111